Duration
15h Th, 15h Mon. WS
Number of credits
| Master in bio-informatics and modelling (120 ECTS) | 3 crédits | |||
| Master in biology of organisms and ecology (120 ECTS) | 3 crédits |
Lecturer
Coordinator
Language(s) of instruction
English language
Organisation and examination
Teaching in the second semester
Schedule
Units courses prerequisite and corequisite
Prerequisite or corequisite units are presented within each program
Learning unit contents
Mathematical models are fundamental tools to understand how biological systems work and interact with the environment. Models are more and more used in many areas of applied ecology and genetic regulation. This lecture is targeted towards giving an introduction to ecological modelling accessible with limited mathematical and computational skills offering an overview of the state of the art of dynamical modelling. We will first define the modelling philosophy and introduce essential concepts for describing and analyzing ecological systems. Then, the students will learn to write the mass-balanced equations that govern dynamical systems, to translate in mathematical formalism ecological and chemical processes, to solve these equations in simplified conditions (e.g. steady state, prey-predator interactions, 2-species competition) and analyze model solution in a phase-plane. The lecture will involve practical work in R that will allow understanding and running (simple) model codes. Examples from the terrestrial, fresh water, ocean systems and gene regulation will be selected.
Learning outcomes of the learning unit
The final aim is to lead the students to understand dynamical modeling and to be able to conceive and run simple models.
Prerequisite knowledge and skills
Basic R knowledge should have already been acquired (for example through STAT0077 or INFO0956, the biological data analysis courses).
Planned learning activities and teaching methods
An important part of the course will be devoted to the implementation of very simple examples in order to get familiar with models implementation
Mode of delivery (face to face, distance learning, hybrid learning)
Face-to-face course
Additional information:
Presential classes, exercises on computers during the classes as well as as homeworks.
All the lecture materials (including podcasts) are made available via eCampus.
Recommended or required readings
A Practical guide to Ecological Modelling, Using R as a simulation Platform. Soetaert and Herman, 2009.
Ecological Dynamics, Gurney and Nisbet, 1998.
Exam(s) in session
Any session
- In-person
written exam ( open-ended questions )
Written work / report
Additional information:
Part Marilaure Grégoire: A written, in-person, examination will be organized in June. It will involve questions on the theoritical and practical parts.
For those who failed in first session, a second session exam will be planned in August/September. The modalities of the retake are similar to those in June.
Part Patrick Meyer: a homework.
Work placement(s)
Organizational remarks
Contacts
Prof. Marilaure Grégoire,
MAST, ULg
e-mail : mgregoire@uliege.be
tel : 04366 3354
******************
Prof. Patrick Meyer,
BioSys Lab
e-mail: Patrick.Meyer@uliege.be
tel : 04366 3030
Association of one or more MOOCs
There is no MOOC associated with this course.